<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.3" xml:lang="en">
  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">Ecological Safety of Coastal and Shelf Zones of Sea</journal-id>
      <journal-title-group>
        <journal-title>Ecological Safety of Coastal and Shelf Zones of Sea</journal-title>
      </journal-title-group>
      <issn publication-format="print">2413-5577</issn>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="publisher-id">20230407</article-id>
      
      <article-categories>
        <subj-group subj-group-type="article-type">
          <subject>Research Article</subject>
        </subj-group>
      </article-categories>

      <title-group>
        <article-title>A Simulation Growth Model for the Cultured Oyster Ostrea edulis L.</article-title>
      </title-group>

      <contrib-group>
        <contrib contrib-type="author">
          <name>
            <surname>Filippova</surname>
            <given-names>T. A.</given-names>
          </name>
          <address>
            <country country="RU">Russian Federation</country>
          </address>
          <email>filippovata@mhi-ras.ru</email>
          <xref ref-type="aff" rid="aff1"/>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Vasechkina</surname>
            <given-names>E. F.</given-names>
          </name>
          <address>
            <country country="RU">Russian Federation</country>
          </address>
          <email>vasechkina.elena@gmail.com</email>
          <xref ref-type="aff" rid="aff1"/>
        </contrib>
      </contrib-group>

      <aff id="aff1">
        <institution>Marine Hydrophysical Institute of RAS</institution>
        <addr-line>Sevastopol</addr-line>
        <country country="RU">Russian Federation</country>
      </aff>

      <pub-date date-type="pub" iso-8601-date="2023-12-20" publication-format="electronic">
        <day>20</day>
        <month>12</month>
        <year>2023</year>
      </pub-date>
      <volume>2023</volume>
      <issue>4</issue>
      <fpage>87</fpage>
      <lpage>100</lpage>

      <history>
        <date date-type="received" iso-8601-date="2023-07-03">
          <day>03</day>
          <month>07</month>
          <year>2023</year>
        </date>
        <date date-type="rev-recd" iso-8601-date="2023-10-11">
          <day>11</day>
          <month>10</month>
          <year>2023</year>
        </date>
        <date date-type="accepted" iso-8601-date="2023-07-29">
          <day>29</day>
          <month>07</month>
          <year>2023</year>
        </date>
      </history>

      <permissions>
        <copyright-statement>Copyright © 2023, T. A. Filippova, E. F. Vasechkina</copyright-statement>
        <copyright-year>2023</copyright-year>
        <copyright-holder>T. A. Filippova, E. F. Vasechkina</copyright-holder>
        <ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/>
        <license>
          <ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by-nc/4.0/</ali:license_ref>
        </license>
      </permissions>

      <self-uri xlink:href="https://ecological-safety.ru/en/repository/issues/2023/04/07/" xlink:title="Page of article">https://ecological-safety.ru/en/repository/issues/2023/04/07/</self-uri>

      <abstract>
        <p>Cultivation of the flat oyster Ostrea edulis L., which has lost its commercial value due to reduction in abundance, is a relevant task. Simulation models of the flat oyster's growth can be used to improve oyster cultivation methods. The proposed simulation model of the O. edulis growth dynamics is based on the principles of dynamic energy balance. The model uses approximations of the oyster's physiological processes (filtration, respiration, excretion, growth, spawning) derived from published observational data. The paper determines functional dependencies of approximation parameters on the environmental conditions. The model was validated using in situ data on the linear and weight growth of the oyster O. edulis cultured in Donuzlav Bay for 30 months from April 2001 to October 2003. The model allowed us to obtain the dynamics of the energy balance components of the flat oyster at different life-cycle stages. The resulting quantitative distribution of growth energy between generative and somatic tissues of the oyster is confirmed by the qualitative description of the oyster's tissue growth based on in situ measurements. The developed model reproduces well the qualitative and quantitative characteristics of the flat oyster functioning processes. The model of the oyster's energy balance can be used as a block of a complex ecological model simulating the cultivation of mollusks on an oyster farm.</p>
      </abstract>

      <kwd-group>
        <kwd>flat oyster</kwd>
        <kwd>Ostrea edulis</kwd>
        <kwd>Donuzlav Bay</kwd>
        <kwd>energy balance model</kwd>
        <kwd>mariculture</kwd>
      </kwd-group>

      <funding-group>
        <funding-statement>The work was performed under state assignment on topic FNNN-2021-0005 "Complex interdisciplinary research of oceanologic processes, which determine functioning and evolution of the Black and Azov Sea coastal ecosystems".</funding-statement>
      </funding-group>

      <author-notes>
        <p><bold>About the authors:</bold></p>
        <p><bold>Tatiana A. Filippova</bold>, Junior Research Associate, Marine Hydrophysical Institute of RAS (2 Kapitanskaya St., Sevastopol, 299011, Russian Federation), <bold>ORCID: 0000-0001-5762-5894</bold>, <bold>Scopus Author ID: 56190548500</bold>, <bold>ResearcherID: AAO-5512-2020</bold>, <email>filippovata@mhi-ras.ru</email></p>
        <p><bold>Elena F. Vasechkina</bold>, Deputy Director for Research, Methodology and Education, Marine Hydrophysical Institute of RAS (2 Kapitanskaya St., Sevastopol, 299011, Russian Federation), DrSci (Geogr.), <bold>ORCID: 0000-0001-7007-9496</bold>, <bold>Scopus Author ID: 6507481336</bold>, <bold>ResearcherID: P-2178-2017</bold>, <email>vasechkina.elena@gmail.com</email></p>
        <p><bold>Contribution of the authors:</bold></p>
        <p><bold>Tatiana A. Filippova</bold> – computational model development, performance of simulation experiments, data analysis, article text writing</p>
        <p><bold>Elena F. Vasechkina</bold> – conceptual model, parametrisation selection, modelling results analysis, text editing</p>
        <p><italic>All the authors have read and approved the final manuscript.</italic></p>
      </author-notes>
    </article-meta>
  </front>

  <body>
    <p>Article text not included.</p>
  </body>

  <back>
    <ref-list>
      <title>REFERENCES</title>
      <ref id="B1">
        <label>1.</label>
        <element-citation publication-type="book">
          <person-group person-group-type="author">
            <name><surname>Krakaitas</surname><given-names>T.F.</given-names></name>
          </person-group>
          <source>Biology of the Black Sea Oyster Ostrea edulis L. Concerning its Reproduction</source>
          <publisher-loc>Kiev</publisher-loc>
          <publisher-name>Naukova Dumka</publisher-name>
          <year>1976</year>
          <size units="pages">80</size>
          <comment>(in Russian)</comment>
        </element-citation>
      </ref>
      <ref id="B2">
        <label>2.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Kobayashi</surname><given-names>M.</given-names></name>
            <name><surname>Hofmann</surname><given-names>E.E.</given-names></name>
            <name><surname>Powell</surname><given-names>E.N.</given-names></name>
            <name><surname>Klink</surname><given-names>J.M.</given-names></name>
            <name><surname>Kusaka</surname><given-names>K.</given-names></name>
          </person-group>
          <article-title>A Population Dynamics Model for the Japanese Oyster, Magallana gigas</article-title>
          <source>Aquaculture</source>
          <year>1997</year>
          <volume>149</volume>
          <fpage>285</fpage>
          <lpage>321</lpage>
          <pub-id pub-id-type="doi">10.1016/S0044-8486(96)01456-1</pub-id>
        </element-citation>
      </ref>
      <ref id="B3">
        <label>3.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Gangnery</surname><given-names>A.</given-names></name>
            <name><surname>Chabirand</surname><given-names>J.-M.</given-names></name>
            <name><surname>Lagarde</surname><given-names>F.</given-names></name>
            <name><surname>Le Gall</surname><given-names>P.</given-names></name>
            <name><surname>Oheix</surname><given-names>J.</given-names></name>
            <name><surname>Bacher</surname><given-names>C.</given-names></name>
            <name><surname>Buestel</surname><given-names>D.</given-names></name>
          </person-group>
          <article-title>Growth Model of the Pacific Oyster, Magallana gigas, Cultured in Thau Lagoon (Méditerranée, France)</article-title>
          <source>Aquaculture</source>
          <year>2003</year>
          <volume>215</volume>
          <issue>1-4</issue>
          <fpage>267</fpage>
          <lpage>290</lpage>
          <pub-id pub-id-type="doi">10.1016/S0044-8486(02)00351-4</pub-id>
        </element-citation>
      </ref>
      <ref id="B4">
        <label>4.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Bacher</surname><given-names>C.</given-names></name>
            <name><surname>Gangnery</surname><given-names>A.</given-names></name>
          </person-group>
          <article-title>Use of Dynamic Energy Budget and Individual Based Models to Simulate the Dynamics of Cultivated Oyster Populations</article-title>
          <source>Journal of Sea Research</source>
          <year>2006</year>
          <volume>56</volume>
          <fpage>140</fpage>
          <lpage>155</lpage>
          <pub-id pub-id-type="doi">10.1016/j.seares.2006.03.004</pub-id>
        </element-citation>
      </ref>
      <ref id="B5">
        <label>5.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Alunno-Bruscia</surname><given-names>M.</given-names></name>
            <name><surname>Bourlès</surname><given-names>Y.</given-names></name>
            <name><surname>Maurer</surname><given-names>D.</given-names></name>
            <name><surname>Robert</surname><given-names>S.</given-names></name>
            <name><surname>Mazurié</surname><given-names>J.</given-names></name>
            <name><surname>Gangnery</surname><given-names>A.</given-names></name>
            <name><surname>Goulletquer</surname><given-names>P.</given-names></name>
            <name><surname>Pouvreau</surname><given-names>S.</given-names></name>
          </person-group>
          <article-title>A Single Bio-Energetics Growth and Reproduction Model for the Oyster Magallana gigas in Six Atlantic Ecosystems</article-title>
          <source>Journal of Sea Research</source>
          <year>2011</year>
          <volume>66</volume>
          <issue>4</issue>
          <fpage>340</fpage>
          <lpage>348</lpage>
          <pub-id pub-id-type="doi">10.1016/j.seares.2011.07.008</pub-id>
        </element-citation>
      </ref>
      <ref id="B6">
        <label>6.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Pouvreau</surname><given-names>S.</given-names></name>
            <name><surname>Bourlès</surname><given-names>Y.</given-names></name>
            <name><surname>Lefebvre</surname><given-names>S.</given-names></name>
            <name><surname>Gangnery</surname><given-names>A.</given-names></name>
            <name><surname>Alunno-Bruscia</surname><given-names>M.</given-names></name>
          </person-group>
          <article-title>Application of a Dynamic Energy Budget Model to the Pacific Oyster, Magallana gigas, Reared under Various Environmental Conditions</article-title>
          <source>Journal of Sea Research</source>
          <year>2006</year>
          <volume>56</volume>
          <issue>2</issue>
          <fpage>156</fpage>
          <lpage>167</lpage>
          <pub-id pub-id-type="doi">10.1016/j.seares.2006.03.007</pub-id>
        </element-citation>
      </ref>
      <ref id="B7">
        <label>7.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Stechele</surname><given-names>B.</given-names></name>
            <name><surname>Maar</surname><given-names>M.</given-names></name>
            <name><surname>Wijisman</surname><given-names>J.</given-names></name>
            <name><surname>Van der Zande</surname><given-names>D.</given-names></name>
            <name><surname>Degraer</surname><given-names>S.</given-names></name>
            <name><surname>Bossier</surname><given-names>P.</given-names></name>
            <name><surname>Nevejan</surname><given-names>N.</given-names></name>
          </person-group>
          <article-title>Comparing Life History Traits and Tolerance to Changing Environments of Two Oyster Species (Ostrea edulis and Magallana gigas) through Dynamic Energy Budget Theory</article-title>
          <source>Conservation Physiology</source>
          <year>2022</year>
          <volume>10</volume>
          <issue>1</issue>
          <fpage>coac034</fpage>
          <pub-id pub-id-type="doi">10.1093/conphys/coac034</pub-id>
        </element-citation>
      </ref>
      <ref id="B8">
        <label>8.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Vasechkina</surname><given-names>E.F.</given-names></name>
            <name><surname>Kazankova</surname><given-names>I.I.</given-names></name>
          </person-group>
          <article-title>Mathematical Modelling of the Growth and Development of the Mussel Mytilus galloprovincialis on Artificial Substrates</article-title>
          <source>Oceanology</source>
          <year>2014</year>
          <volume>54</volume>
          <issue>6</issue>
          <fpage>763</fpage>
          <lpage>770</lpage>
          <pub-id pub-id-type="doi">10.1134/S0001437014060113</pub-id>
        </element-citation>
      </ref>
      <ref id="B9">
        <label>9.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Vyalova</surname><given-names>O.Yu.</given-names></name>
          </person-group>
          <article-title>Growth and Terms of Obtaining Marketable Triploid Oysters from Donuzlav Liman (Black Sea, Crimea)</article-title>
          <source>Marine Biological Journal</source>
          <year>2019</year>
          <volume>4</volume>
          <issue>1</issue>
          <fpage>24</fpage>
          <lpage>32</lpage>
          <pub-id pub-id-type="doi">10.21072/mbj.2019.04.103</pub-id>
        </element-citation>
      </ref>
      <ref id="B10">
        <label>10.</label>
        <element-citation publication-type="paper-conference">
          <person-group person-group-type="author">
            <name><surname>Sytnik</surname><given-names>N.A.</given-names></name>
            <name><surname>Polyakova</surname><given-names>T.V.</given-names></name>
          </person-group>
          <article-title>Characteristics of Allometric Growth of the Flat Oyster (Ostrea edulis, Linnaeus (1758)) in Ontogenesis</article-title>
          <source>Water Bioresources and Aquaculture of the South of Russia: Proceedings of the All-Russian Scientific and Practical Conference on the Occasion of the 20th Anniversary</source>
          <publisher-loc>Krasnodar</publisher-loc>
          <publisher-name>Kubanskiy gosudarstvennyy universitet</publisher-name>
          <year>2018</year>
          <fpage>138</fpage>
          <lpage>142</lpage>
          <comment>(in Russian)</comment>
        </element-citation>
      </ref>
      <ref id="B11">
        <label>11.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Sitnik</surname><given-names>N.A.</given-names></name>
          </person-group>
          <article-title>About Some Ecological Laws of a Filter Feeding of Oyster (Ostrea edulis L.)</article-title>
          <source>Scientific Notes of Taurida V. Vernadsky National University. Series: Biology, Chemistry</source>
          <year>2010</year>
          <volume>23</volume>
          <issue>3</issue>
          <fpage>143</fpage>
          <lpage>153</lpage>
          <comment>(in Russian)</comment>
        </element-citation>
      </ref>
      <ref id="B12">
        <label>12.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Mo</surname><given-names>C.</given-names></name>
            <name><surname>Neilson</surname><given-names>B.</given-names></name>
          </person-group>
          <article-title>Standardization of Oyster Soft Tissue Dry Weight Measurements</article-title>
          <source>Water Research</source>
          <year>1994</year>
          <volume>28</volume>
          <issue>1</issue>
          <fpage>243</fpage>
          <lpage>246</lpage>
          <pub-id pub-id-type="doi">10.1016/0043-1354(94)90140-6</pub-id>
        </element-citation>
      </ref>
      <ref id="B13">
        <label>13.</label>
        <element-citation publication-type="book">
          <person-group person-group-type="author">
            <name><surname>His</surname><given-names>E.</given-names></name>
            <name><surname>Beiras</surname><given-names>R.</given-names></name>
            <name><surname>Seaman</surname><given-names>M.N.L.</given-names></name>
          </person-group>
          <source>The Assessment of Marine Pollution - Bioassays with Bivalve Embryos and Larvae</source>
          <source>Advances in Marine Biology</source>
          <year>1999</year>
          <volume>37</volume>
          <fpage>1</fpage>
          <lpage>178</lpage>
          <pub-id pub-id-type="doi">10.1016/s0065-2881(08)60428-9</pub-id>
        </element-citation>
      </ref>
      <ref id="B14">
        <label>14.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Maathuis</surname><given-names>M.A.M.</given-names></name>
            <name><surname>Coolen</surname><given-names>J.W.P.</given-names></name>
            <name><surname>van der Have</surname><given-names>T.</given-names></name>
            <name><surname>Kamermans</surname><given-names>P.</given-names></name>
          </person-group>
          <article-title>Factors Determining the Timing of Swarming of European Flat Oyster (Ostrea edulis L.) Larvae in the Dutch Delta Area: Implications for Flat Oyster Restoration</article-title>
          <source>Journal of Sea Research</source>
          <year>2020</year>
          <volume>156</volume>
          <fpage>101828</fpage>
          <pub-id pub-id-type="doi">10.1016/j.seares.2019.101828</pub-id>
        </element-citation>
      </ref>
      <ref id="B15">
        <label>15.</label>
        <element-citation publication-type="paper-conference">
          <person-group person-group-type="author">
            <name><surname>Sytnik</surname><given-names>N.A.</given-names></name>
          </person-group>
          <article-title>Growth and Production of Oyster (Ostrea edulis L.) in the Donuzlav Liman in the Black Sea</article-title>
          <source>Ekologicheskaya Bezopasnost' Pribrezhnyi i Shel'fovoy Zon i Kompleksnoe Ispol'zovanie Resursov Shel'fa</source>
          <publisher-loc>Sevastopol</publisher-loc>
          <publisher-name>MHI</publisher-name>
          <year>2011</year>
          <volume>25</volume>
          <issue>1</issue>
          <fpage>429</fpage>
          <lpage>434</lpage>
          <comment>(in Russian)</comment>
        </element-citation>
      </ref>
      <ref id="B16">
        <label>16.</label>
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name><surname>Mann</surname><given-names>R.</given-names></name>
          </person-group>
          <article-title>Some Biochemical and Physiological Aspects of Growth and Gametogenesis in Magallana gigas and Ostrea edulis Grown at Sustained Elevated Temperatures</article-title>
          <source>Journal of the Marine Biological Association of the United Kingdom</source>
          <year>1979</year>
          <volume>59</volume>
          <issue>1</issue>
          <fpage>95</fpage>
          <lpage>110</lpage>
          <pub-id pub-id-type="doi">10.1017/S0025315400046208</pub-id>
        </element-citation>
      </ref>
      <ref id="B17">
        <label>17.</label>
        <element-citation publication-type="book">
          <person-group person-group-type="author">
            <name><surname>Kholodov</surname><given-names>V.I.</given-names></name>
            <name><surname>Pirkova</surname><given-names>A.V.</given-names></name>
            <name><surname>Ladigina</surname><given-names>L.V.</given-names></name>
          </person-group>
          <source>Cultivation of Mussels and Oysters in Black Sea</source>
          <publisher-loc>Sevastopol</publisher-loc>
          <year>2010</year>
          <size units="pages">424</size>
          <comment>(in Russian)</comment>
        </element-citation>
      </ref>
    </ref-list>
  </back>
</article>
